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Biochemical analyses for dental age estimation: a review



For various legal and forensic scenarios, establishing an individual’s age, both living and dead, plays a crucial role. Various morphological, radiographic, and molecular methods can be used for age estimation. In children and adolescents, age estimation is based on the established developmental stages. However, in adults, where the development ceases into maturation, the degenerative changes play a role in determining the age.

Main body of the abstract

In the natural aging process, several molecular changes occur most commonly in the long-living proteins and hard tissues like the teeth and bone. These molecular changes gradually lead to alterations in several organs and organ systems, which can be quantified and correlated with age, including aspartic acid racemization, collagen crosslinks, advanced glycation-end products, and mitochondrial DNA mutations.

Short conclusion

Among the above methods, the racemization of aspartic acid can be considered as the most precise method. The main advantage of using aspartic acid racemization is that the sample can be collected from tissues (teeth) protected from various environmental and nutritional factors. If all the confounding factors are stable, the utilization of advanced glycation-end products can also be considered valuable. Environmental factors like lead accumulations may also help determine the age. However, further studies need to be conducted, focusing on providing a more standardized method. This review provides a concise summary of the biochemical techniques that can be used for estimation of age.


An essential element of the forensic practice is to assign the exact age to both living individuals and human remains. Numerous methods have been proposed for age estimation for various legal, social, and forensic reasons, based on morphology, radiography, and biochemical changes. In children and adolescents, estimation of age is focussed mainly on the various developmental stages a human body undergoes until it completes maturation (Hegde et al. 2017, Ozveren et al. 2018, Demirjian et al. 1973). However, in adults, when development ceases into maturation, the application of these methods is not possible. So, when growth attains maturity, the age estimation is based on degenerative changes in the body (Cameriere et al. 2007). To estimate age in decomposed or skeletonized human remains, and in the absence of soft tissue remains, the bone and teeth are widely used. The majority of age estimation techniques are based on morphological and radiographic changes, may tend to show inconsistent results. The morphological methods are subjective and may give an error of up to ten years (Waite et al. 1999).

In natural aging processes, several molecular changes commonly occur in the long-living proteins. These molecular changes gradually lead to alterations in several organs and organ systems including the teeth and bone. Several such changes have been studied and identified over the years. Aspartic acid racemization, collagen crosslinks, advanced glycation-end products, and mitochondrial DNA (mtDNA) mutations are some of the most established methods of biochemical age estimation. The environmental factors, such as lead accumulation, may also play a role in determining the age. The current narrative review describes the various biochemical methods, the methodology, advantages, and drawbacks concisely.

Main text

Aspartic acid racemization (AAR)

In most living organisms, optically active amino acids initially consist of only L-forms, which partially get converted into D-forms until an equilibrium is obtained (Ogino and Ogino 1988). Under this equilibrium, the D/L ratio of aspartic acid is 1.0 (Ogino et al. 1985). This conversion is known as racemization, which causes alterations in the conformation of metabolically stable proteins, thereby inducing changes in their biochemical activities (Fig. 1). It is temperature, pH, and humidity-dependent (Alkass et al. 2010). This phenomenon has been observed in long-living proteins. Among the amino acids, aspartic acid has the fastest rate of racemization, followed by alanine, glutamic acid, isoleucine, and leucine. Therefore, aspartic acid is most commonly used for age estimation. The chemical instability of asparaginyl and aspartyl residues in proteins may result in modifications that increase the d-aspartate residue with age (Geiger and Clarke 1987). Amino acids undergo continuous formation and degradation. In such cases, tissues with long-living proteins and low metabolic rates provide more precise results than proteins with high metabolic rates (Alkass et al. 2010).

Fig. 1
figure 1

Racemization of aspartic acid

In humans, the presence of long-living proteins is observed in hard tissues of the teeth, bone (type I collagen, telopeptides, osteocalcin), sclera of the eye (elastin), lung parenchyma (elastin), arterial wall (elastin), and intervertebral disc. It is also observed in articular cartilage (proteoglycans), brain (tubulin, synapsin, proteoglycans, myelin base protein, white matter, β amyloid protein, tar protein), ocular lens (αA-crystallin), cartilage, membrane proteins of erythrocytes, and skin (Ritz-Timme and Collins 2002).

Even after all other soft tissues have degenerated, hard tissues like the teeth and bone are well preserved. The teeth, in particular, are frequently conserved even when most of the bones have been destroyed or mutilated. In 1975, Helfman and Bada first used the aspartic acid racemization method in dentin to assess age (Helfman and Bada 1975). Subsequently, several studies have been conducted by analyzing various dental tissues like enamel (Griffin et al. 2010), dentin (Helfman and Bada 1976), (Ohtani and Yamamoto 2010; Minegishi et al. 2019), cementum (Ohtani et al. 1995), and using the tooth as a whole unit. The rate of aspartic acid racemization in root dentin was investigated in a Polish population (Wochna et al. 2018), and researchers found a strong correlation (0.96–0.98) between chronological age and aspartic acid racemization levels, with a standard estimation error of 2.95–4.84 years. A correlation between the age of dentin and the extent of aspartic acid racemization was identified to be approximately 0.96 with a standard error of 5.69 years (Ritz et al. 1990).

The extent of post mortem preservation on aspartic acid racemization in the dentin of healthy, impacted, and carious teeth were studied and noted that the teeth can be preserved for up to 10 years, showing a negligible effect on estimated values with an error of 4 years (Ogino et al. 1985). The presence of caries in teeth has been shown to influence the rate of racemization (Griffin et al. 2008). Deviations up to 20.39 years were noted in carious teeth (Sirin et al. 2018). It is assumed that caries induce protein degradation, which thereby generates small fragments of lower steric hints, leading to faster accumulation of d-aspartic acid (Collins et al. 1999). Protein degradation is observed in cases of archaeological tooth samples with long post-depositional intervals, which may lead to the formation of smaller peptide fragments. This may lead to a faster conversion of L-forms to D-forms, resulting in increased accumulation of D-Asp and hence may show false high age at death estimates (Mahlke et al. 2021).

The aspartic acid racemization is also observed in deciduous teeth and a correlation between chronological age and rate of racemization has been identified (r=0.824–0.98), proving it to be applicable in deciduous teeth (Ohtani 1994).

With the increase in temperature, the extent of aspartic acid racemization increases significantly (r=0.913; p<0.01) with heating time, and the stability rates of dentin at different temperatures (22–25°C, 4°C, and −30°C) showed no significant changes after 1 year with an error range of 5 years (Minegishi et al. 2019). The position of teeth and the time taken for dentin formation also influence the rate of racemization and is highest in the first molars in the middle-aged population and second molars in elderly individuals (Ohtani et al. 2003). No differences in racemization rates were noted between the jaws (Rajkumari et al. 2013).

High power liquid chromatography (HPLC) and gas chromatography (GC) are generally used to analyze the racemic mixture. In the various available HPLCs, ion-exchange chromatography (IEC) is usually preferred (Kaufman and Manley 1998). The gas chromatographic method is considered as the most sensitive method (Minegishi et al. 2019). The procedure involves acid extraction, which results in two parts: the acid-soluble and the insoluble acid fraction. The soluble acid fraction mainly consists of collagen, and the insoluble fraction consists of non-collagenous proteins. The insoluble acid fraction (collagen) undergoes constant remodeling. The rate of racemization is rapid in the non-collagenous proteins. The d-aspartate accumulates with age predominantly in the non-collagenous proteins (Ritz et al. 1994). Such non-collagenous proteins like osteocalcin are also found in bone, and the extent of aspartic acid racemization using osteocalcin is the measure of the aging of these proteins, thereby measuring an individual’s age. However, the correlation between the rate of racemization and age varies with the type of bone used, the highest being in the sternum and the lowest in the pelvic and sacral bone (Ohtani et al. 2002). The alveolar bone, a metabolically more active bone, shows an increased ratio of racemization with age. The rate is significantly higher in males than in females. However, the alveolar bone cannot be used in edentulous individuals (Ohtani et al. 2007).

Non-dental tissues like the yellow ligament of the spine, and sclera, contain long-living proteins like elastin that accumulate d-aspartate residues, making it a suitable testing sample with results closer to the actual age and less time consuming. But during sample collection, elastin’s purification is necessary as the AAR is strongly influenced by collagen contamination (Ritz-Timme et al. 2003). However, it is not reliable for corpses under the influence of high temperatures (Klumb et al. 2016). Evidence suggests that this method is highly accurate and precise in determining the age in both humans and cadavers with an error of fewer than ± 3 years (Ohtani and Yamamoto 2010).

Collagen crosslinks

The central portion of type I collagen has a triple-helical structure to stabilize the collagen network between which covalent crosslinks exist (Eyre 1987). These reducible crosslinks are present in newly synthesized collagen. Their proportion rapidly increases during the growth phase to reach a maximum. As the growth rate slows down, the proportion of these crosslinks decreases and forms a mature non-reducible crosslink (Robins et al. 1973). These age-related changes are observed in the skin (Robins et al. 1973), dentin (Mechanic et al. 1971), and cartilage (Eyre and Oguchi 1980).

The crosslink patterns are characteristic and are formed by two divalent crosslinks of dehydro-dihydroxylysinonorleucine and dehydro-hydroxylysinonorleucine. The bone and dentin collagen also contain two non-reducible crosslinks of hydroxypyridinium, namely pyridinoline and deoxypyridinoline. The calcified tissues of bone and teeth show a significant peak in lysyl hydroxypyriidinium residues (Eyre et al. 1984).

Pyridinoline is a non-reducible crosslink, which is the main maturation product of reducible crosslinks prominent in bone and dentin (Fugimoto et al. 1978). It has a 3-hydroxypyridinium ring with a three side-chain that embodies their hydrolysine residues. It is abundant in adult cartilage at one residue per collagen molecule. Almost all reducible crosslinks in cartilage collagen seem to progress rapidly to hydroxypyridinum crosslinks. Deoxypyridinoline has been identified as a minor component in the adult dentin residues.

The correlation between collagen crosslinks and age has been studied, and it was observed that the hydroxypyridinium crosslinks increased with age (Walters and Eyre 1983). Evaluation of deoxypyridinoline crosslinks from dentin can show an error of 14.9 years (Martin-De Las Heras et al. 1999). Analysis of these crosslinks is studied using enzyme immunoassay and chromatography.

Analysis of dentin at different ages, therefore, is a useful index of the rate of maturation of hydroxylysine-based crosslinks in collagen fibrils. However, the estimated age can have a high error rate. Standardization needs further research.

Advanced glycation-end products (AGEs)

Louis–Camille Maillard, in 1912, discovered that when amino acids are heated in the presence of reducing sugars, they turn brown. This biological process results in the formation of advanced glycation-end products, known as Maillard reaction. It involves a non-enzymatic reaction of the blood glucose with body proteins, which leads to a cumulative modification of tissue proteins throughout the body (Tessier 2010). Maillard reaction can be described in three stages: early, intermediate, and late stages (Singh et al. 2001). In the early stage, reducing sugars like glucose, fructose, mannose, and galactose react with different molecules like proteins, nucleic acids, and lipids to form a stable ketoamide called Amadori compound. In the next stage, this Amadori compound further degrades into various carbonyl compounds like glyoxal, 3-deoxyglucosone, and methylglyoxal. The final stage involves reactions between the carbonyl compound with amino acids, leading to complex rearrangements, cleavage, and covalent binding reactions of the Amadori products (Fig. 2). This Amadori arrangement is irreversible and results in the formation of stable adducts and protein crosslinks called advanced glycation products (Schleicher and Wieland 1986).

Fig. 2
figure 2

Formation of advanced glycation-end products

Various end products including pentosidine (Sell and Monnier 1990), fructoselysine (Lyons et al. 1991), and N-carboxymethyl lysine (CML) (Fu et al. 1996) have been analyzed. These AGEs accumulate in long-lived proteins. They can cause tissue damage and may also contribute to the development of complications in diabetes mellitus (Brown et al. 2005), atherosclerosis (Brownlee 1994), aging (Fu et al. 1996), and Alzheimer’s disease (Vitek et al. 1994). Systemic conditions like advanced renal diseases, hypertension, inflammation, oxidative stress, and hyperglycemia also accelerate the formation of AGEs (Singh et al. 2001). The formation of these products in vitro and in vivo is turnover dependent on the chemically modified protein target and sugar concentration. These AGEs easily bind to collagen and act as a crosslink between the collagen fibrils in collagen-rich tissues like the crystalline lens (Lyons et al. 1991), articular cartilage, aorta (Oimomi et al. 1989), rib cartilage, skin collagen (Dyer et al. 1993), intervertebral disc, and dentin.

Along with nutrients, dentin also receives AGEs from the blood vessels. They form crosslinks with collagen fibers and induce various mechanical and morphological changes in dentin, along with brownish discoloration (Ilea et al. 2018). By analyzing the degradation of dentin collagen by carboxylic protease, the characteristic Maillard fluorescence can be noticed (Kleter et al. 1997). An early Maillard reaction product, called furosine, has been examined in healthy and carious dentin (Kleter et al. 1998). AGEs like CML get accumulated in dentin physiologically, which can be used for analysis (Miura et al. 2014). Pentosidine levels in root dentin (including healthy, diabetic, stored, and heated root dentin) can be quantified and used for age estimation. Heated and carious teeth show high levels of pentosidine (Greis et al. 2018). In cases of long post-depositional intervals, pentosidine levels remain stable in the dentinal collagen. It is assumed that the glycation-based changes stabilize the affected region and protect it from degradation. In a recently conducted study on archaeological samples, results have shown that the age estimation by measuring the pentosidine levels has proven to be more accurate in comparison to D-Asp (Mahlke et al. 2021).

The advanced glycation-end products can be analyzed using fluorescence spectroscopy, mechanical indentation analysis, immunohistochemical staining, and immune-electron microscopy (Miura et al. 2014), HPLC (Requena et al. 2003), gas chromatography-mass spectroscopy (GC-MS), and enzyme-linked immunosorbent assay (ELISA). However, various factors influence the accumulation of these products. Elevated blood glucose levels may lead to increased production of AGEs, which can be analyzed from tissues like the skin collagen, blood vessel walls, and interstitial connective tissue. Therefore, individuals with diabetes can give false high age estimates. Also, caries-affected teeth show higher values of pentosidine. More standardization is necessary for such samples.

Lead accumulation

Lead is considered as one of the most significant pollutants in the environment. The major sources of lead are through the industrial complexes that release lead into the environment through drinking water, fumes from car exhausts where leaded petrol is still in use, lead containing paints, leaded water pipes, and from traffic.

About 90% of lead is accumulated in the bones. The teeth, blood, and other soft tissues also contain considerable amount of lead which progressively increases with age. However, the blood lead levels are instantaneous, which reflect an immediate lead exposure (Steenhout and Pourtois 1981). In the bone, it is removed over time due to its remodeling, but in the teeth, once deposited, it cannot be removed as there is no turnover of apatite. Therefore, the teeth are the most suitable material for studying total past lead exposure (Grobler et al. 2000).

The concentration of lead has been used to study the pollutant levels primarily. However, lead levels in the teeth can also be utilized to analyze an individual’s age due to its progressive accumulation (Bercovitz and Laufer 1991). In the teeth, dentin has been identified as the leading site for lead accumulation as compared with enamel (Gulson and Gillings 1997). A significant correlation between dentine lead levels and age was found in the Kuwaiti population and the difference between the real age and calculated age was 1.3 + 4.8 years (Al-Qattan and Elfawal 2010). The lead is separated using anion exchange chromatography and measured using mass spectrophotometry, and atomic absorption spectrophotometry.

It is essential to note that the atmospheric lead levels influence the amount accumulated, making it population and region-specific. It may therefore be inapplicable as a generalized method for age estimation. Although if region-specific lead levels can be determined and correlated with age, this method can be employed.

Mitochondrial DNA

Mitochondrial DNA is present near the inner membrane of the mitochondria and is influenced by the presence of free radicals which accumulate with age. As stated by Harman in the theory of aging, the production of free radicals increases with age. This can be explained as an imbalance between pro-oxidants and anti-oxidants (Harman 1956). During the breakdown of enzymes in mitochondria, reactive oxygen species are produced. These cause damage to proteins, nucleic acids, and phospholipids. This leads to the synthesis of functionally impaired respiratory sub-units, causing mitochondrial DNA mutations that get accumulated with age and cause degenerative diseases (Horan et al. 2012). Such somatic, age-related mitochondrial DNA mutations may cause inefficient cell function, leading to several clinical manifestations, including renal dysfunction, cardiomyopathy, and neurological diseases (Papiha et al. 1998). Several studies have found a relation between mtDNA mutations and aging in tissues like the brain, skeletal muscle (Liu et al. 1998), and heart (Corral-Debrinski et al. 1992; Cortopassi et al. 1992). A semiquantitative PCR conducted on dentin and pulp of third molars demonstrated a decrease in the quantity of mtDNA with age (Mörnstad et al. 1999). In addition, a strong linear negative correlation has been seen between the amplification of mtDNA and dentin age using real-time PCR in third molars (Zapico and Ubelaker 2016).

The mtDNA damage is measured using real-time PCR. The process, however, is time-consuming, expensive, and technique-sensitive. The forensic implications of this method still need to be standardized for practical applications. The relation between the mutations and aging needs further evaluation for better applications in ancestry studies and to estimate age at death.


Among the above chemical methods, the most precise method is the racemization of the aspartic acid. Research for the standardization of sample collection, accuracy, and method reliability has been conducted in different parts of the world. The main advantage of using AAR is that the sample can be collected from tissues most protected from environmental and nutritional factors (teeth). If all the confounding factors are stable, the utilization of AGE products can also be considered valuable. However, these methods require studies focusing on providing a more standardized method. It is indispensable to note that all the above methods are invasive and involve the entire tooth destruction.

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Aspartic acid racemization


Ethylenediaminetetraacetic acid


Advanced glycation-end product


Mitochondrial DNA


High power liquid chromatography


Gas chromatography


Ion-exchange chromatography


Gas chromatography-mass spectroscopy


Enzyme-linked immunosorbent assay


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Authors acknowledge the Vishnu Dental College, Bhimavaram, Andhra Pradesh, India.



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PM reviewed literature, collected data, and drafted manuscript. RM reviewed literature, collected data, and drafted manuscript. PS edited the data and made necessary corrections. SB edited the data and made necessary corrections. STA edited the data and made necessary corrections. The authors have read and approved the final manuscript.

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Correspondence to Ravikanth Manyam.

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Pillalamarri, M., Manyam, R., Pasupuleti, S. et al. Biochemical analyses for dental age estimation: a review. Egypt J Forensic Sci 12, 2 (2022).

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  • Age estimation
  • Biochemical methods
  • Aspartic acid racemization
  • Collagen crosslinks
  • Advanced glycation-end products
  • Lead accumulations
  • mtDNA mutations