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Table 4 Genepop output reporting the Hardy–Weinberg tests, global Hardy–Weinberg tests [score (U) test], mean squared allele size difference, tests and tables for linkage disequilibrium, population differentiation, Fis, and other correlation

From: Evaluation and comparison of population genetics software in Rabari Tribe of Gujarat population

Locus

Null allele frequencies

P val

S.E

FIS estimates

W&C R&H

MSDinter

Generic differentiation (G test)

Geneotypic differentiation (G test)

Fwc(IS)

D3S1358

0.0797

0.1845

0.0034

− 0.0068

0.0299

2.6812

− 0.0068

D1S1656

0.0084

0.3019

0.0082

− 0.0033

− 0.0130

12.02

− 0.0033

D6S1043

0.0000

0.3604

0.0135

− 0.0093

− 0.0244

17.599

− 0.0093

D13S317

0.0429

0.4764

0.0080

0.0843

0.0399

6.5347

0.0843

PENTA-E

0.0000

0.7326

0.0105

− 0.0443

− 0.0278

13.057

− 0.0443

D16S539

0.0039

0.5402

0.0059

− 0.0030

− 0.0112

4.5114

− 0.0030

D18S51

0.0297

0.1208

0.0108

0.0593

0.0045

10.991

0.0593

D2S1338

0.0000

0.7253

0.0079

− 0.0336

− 0.0417

10.397

− 0.0336

CSF1PO

0.0151

0.2302

0.0052

0.0203

0.0130

2.1976

0.0203

PENTA-D

0.1084

0.0017

0.0004

0.2034

0.1744

5.7478

0.2034

TH01

0.0171

0.6526

0.0054

− 0.0504

− 0.0431

3.1653

− 0.0504

VWA

0.0141

0.7957

0.0045

− 0.0121

− 0.0288

4.7722

− 0.0121

D21S11

0.0360

0.9557

0.0019

0.0476

0.0212

3.6559

0.0476

D7S820

0.0000

0.5389

0.0090

− 0.1203

− 0.0582

8.046

− 0.1203

D5S818

0.1652

0.5699

0.0060

0.0348

0.0359

2.0094

0.0348

TPOX

0.4990

0.2971

0.0003

− 0.0445

− 0.0155

2.9988

− 0.0445

D8S1179

0.0143

0.6571

0.0057

0.0434

0.0121

8.0188

0.0434

D12S391

0.0000

0.3666

0.0094

− 0.0043

− 0.0063

10.048

− 0.0043

D19S433

0.0000

0.8676

0.0081

− 0.0875

− 0.0304

6.7996

− 0.0875

FGA

0.0049

0.6252

0.0101

− 0.0398

− 0.0343

11.971

− 0.0398

  1. *Global Hardy–Weinberg tests [score (U) test]: P value 0.4412, S.E. 0.0263
  2. *Estimation of exact P values by the Markov chain method
  3. *Markov chain parameters for all tests: dememorization: 10,000, batches: 20, iterations per batch: 5000, Hardy–Weinberg: probability test
  4. *MSD: mean squared allele size difference
  5. Only 1 population, no differentiation test, no FST and no FIT