Table 3 Statistics of taxon identification obtained through BSSH and QIIME (in brackets). The Shannon Species Diversity Index is reported as a measure of species diversity in each sample. The QIIME analysis shows a reduced number of species and genera identified when compared to BSSH
Sample ID | Number of reads PF | % reads classified to genus | Shannon Species Diversity | Number of species identified | Number of genera identified |
|---|---|---|---|---|---|
54 | 74,821 | 36.32% | 1.071 | 208 (88) | 127 (61) |
51 | 116,158 | 65.75% | 1.464 | 324 (155) | 252 (106) |
11 | 1,275,602 | 68.47% | 1.397 | 582 (242) | 421 (170) |
34 | 226,684 | 60.75% | 0.562 | 370 (152) | 290 (106) |
22 | 71,584 | 74.34% | 1.137 | 294 (116) | 226 (83) |
7 | 393,827 | 7.97% | 0.417 | 390 (148) | 313 (91) |
35 | 1,202,353 | 31.22% | 1.191 | 596 (240) | 448 (166) |
53 | 158,877 | 67.75% | 1.867 | 439 (192) | 293 (125) |
18 | 206,093 | 90.26% | 1.113 | 216 (119) | 172 (83) |
29 | 594,710 | 90.02% | 1.043 | 524 (246) | 380 (168) |
23 | 59,588 | 48.09% | 1.845 | 511 (272) | 339 (178) |
31 | 221,512 | 88.41% | 2.169 | 611 (262) | 429 (168) |
30 | 307,746 | 21.89% | 1.258 | 548 (194) | 382 (138) |
26 | 569,935 | 86.75% | 2.908 | 900 (394) | 566 (256) |
12 | 150,823 | 88.50% | 1.432 | 208 (66) | 184 (49) |
25 | 1,992,943 | 93.77% | 0.644 | 473 (155) | 384 (113) |